Welcome and introduction
Agenda, resources and other useful information
Welcome!
Most materials used in this training are from the Galaxy community and are the result of a collaborative work. Thanks to all the contributors and the Galaxy Training Network!
We would like to thank:
Computing resources
The computing resources for this training have been provided by the
datacenter
You will receive all the details to connect to your Virtual Machine.
Learning outcomes
After this course you should be able to:
- use utilities to develop a good Galaxy tool wrapper
- make a tool ready for publishing on a ToolShed
- install a tool in a Galaxy instance
- access tools and workflows through Galaxy API
and you will be exposed to these software:
We assume you are familiar with:
- Galaxy Tool Interface
- Galaxy Histories
- Galaxy Workflows
- Data import
- Data sharing
Agenda
July 3
| Title | Lecture/Practical |
|---|---|
| Galaxy at a Glance | Lecture |
| Why Galaxy tools | Lecture |
| Help Resources | Lecture |
| Install a Galaxy server | Practical |
July 4
| Title | Lecture/Practical |
|---|---|
| Docker and Galaxy | Lecture / Practical |
| Galaxy Tool XML File | Lecture / Practical |
| Building Galaxy Tools | Lecture / Practical |
| Integrating Docker-based tools within Galaxy | Lecture |
July 5
| Title | Lecture/Practical |
|---|---|
| Galaxy Interactive Tour | Lecture |
| BioBlend API | Lecture / Practical |